PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452902.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 344aa    MW: 36658.9 Da    PI: 7.6375
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.75.1e-671312954154
          DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssa 94 
                      +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq    ++++ + a+     +++++k++r  +s++++++s+t++s++
  XP_016452902.1 131 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGsssqSTSSAKKPRLVNSQATTTASHTSTSNT 225
                     5689*********************************************98766655544332233447788899999999************** PP

          DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++++tss          lP +v+++avf+cvrv+svddge+e+aYq++v igGhvfkG+LydqG+ee
  XP_016452902.1 226 TTPRSFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGEDEFAYQAVVRIGGHVFKGFLYDQGIEE 295
                     ********999********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-62132294IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-27134176IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.9E-29246293IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQINYGLSPE MGMFVVHPAS FHHHHHHHQN SHQENSINFD PINGSNISTS HATNTSLGVG  60
VIPLLTATPL TNMVSFDDQD LVSRNRGNDT EGGGFQFFSN QQPQNSYTKN SNVLGSGNGN  120
NNIVGSVSST SSATCQDCGN QAKKDCPHRR CRTCCKSRGF DCTTHVKSTW VPAARRRERQ  180
LIGGTSTNVN VAAGSSSQST SSAKKPRLVN SQATTTASHT STSNTTTPRS FDTSSSHQDA  240
SFKASLPGQV RAPAVFKCVR VTSVDDGEDE FAYQAVVRIG GHVFKGFLYD QGIEEGKDNN  300
NFPNLSDLHL GGSGNITNET SDLYAASTGG GGLLGGSNYG NQIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604000.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
RefseqXP_016452902.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK92e-80LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLM1AK471e-160M1AK47_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000244381e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76552331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.41e-71Lateral root primordium (LRP) protein-related